PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503841.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 354aa    MW: 39898.7 Da    PI: 5.5861
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503841.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.17.3e-2143136185
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                     rWt+qe+l+Liea++ +e+  +  +            p+W+ vs+ ++++g++r+++qC+++w nl ++y+kik++e++ ++e++s + + +++
  XP_004503841.1  43 RWTRQETLVLIEAKKVVENGDQVCRyrsstsglvHTDPKWDLVSSLCQQHGVKRGAVQCRKRWGNLLTDYRKIKKWESNIKDENESFWIMRNDV 136
                     8**************999987743233446777799********************************************99999888887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.006240111IPR001005SANT/Myb domain
PfamPF138376.8E-1242130No hitNo description
PROSITE profilePS500906.60943109IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.5E-543109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MCEPNSEKIC EGSAESPTTP VGRQPTEAEP KSSERIKATR HPRWTRQETL VLIEAKKVVE  60
NGDQVCRYRS STSGLVHTDP KWDLVSSLCQ QHGVKRGAVQ CRKRWGNLLT DYRKIKKWES  120
NIKDENESFW IMRNDVRKEN KLPGFFDSVV YNVLDGGVCT AAAFPLTLIK MAPREENGDQ  180
VEMPVAALED ENEEDEDEAT VDCEKMGWST EEENIETNTN GNMVSNSPFK TPNVMKTNIR  240
GSFNIIPLIT VPNSAERQQQ PSCQGTYGQG FQREPLLNEG YKRKRLSPDN SEDTDFNDNV  300
IKVLRRNSNI LKAHLGAQNI NSQLARDQQK QQTDSLVAAL GKLTDALTKI ADKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1267940.0AC126794.15 Medicago truncatula chromosome 4 clone mth2-24j7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503841.10.0PREDICTED: uncharacterized protein LOC101513291
TrEMBLG7LIU00.0G7LIU0_MEDTR; Myb/SANT-like DNA-binding domain protein
STRINGGLYMA05G38580.21e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.15e-52Trihelix family protein